MRIQC: individual T2w report

Summary

Subject ID: testUTdallas_pre.
Date and time: 2018-05-31, 15:48.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.5105104949297476
cnr			2.0570869388521262
efc			0.6729395934754027
fber			574.8831787109375
fwhm	avg		2.861286445429475
fwhm	x		2.435490145166525
fwhm	y		3.3908776231301974
fwhm	z		2.7574915679917025
icvs	csf		0.4302652565379405
icvs	gm		0.44306358678136243
icvs	wm		0.12667115668069706
inu	med		0.9925389289855957
inu	range		0.008339464664459229
qi	1		0.00030721172342905705
qi	2		2.3774989307168747e-06
rpve	csf		15.304523927371246
rpve	gm		14.13186445321695
rpve	wm		46.67207492040654
size	x		179
size	y		288
size	z		288
snr	csf		13.327767413968576
snr	gm		14.389683847507502
snr	total		9.83628743841678
snr	wm		1.7914110537742651
snrd	csf		110.11079399439502
snrd	gm		80.65005141389612
snrd	total		75.85443192502261
snrd	wm		36.80245036677669
spacing	x		0.9999999403953552
spacing	y		0.8889999389648438
spacing	z		0.8889999985694885
summary	bg	k	7.1281650250804525
summary	bg	mad	17.79623031616211
summary	bg	mean	21.943981170654297
summary	bg	median	12.003374099731445
summary	bg	n	358138.0
summary	bg	p05	0.0
summary	bg	p95	76.57001457214355
summary	bg	stdv	25.970705032348633
summary	csf	k	-0.08738338764844311
summary	csf	mad	228.87490844726562
summary	csf	mean	2993.47314453125
summary	csf	median	2991.0673828125
summary	csf	n	107993.0
summary	csf	p05	2630.669091796875
summary	csf	p95	3366.81337890625
summary	csf	stdv	224.42269897460938
summary	gm	k	0.38996090416535356
summary	gm	mad	149.9390106201172
summary	gm	mean	2197.78173828125
summary	gm	median	2190.791015625
summary	gm	n	93531.0
summary	gm	p05	1958.8084716796875
summary	gm	p95	2459.345458984375
summary	gm	stdv	152.24652099609375
summary	wm	k	13.17165085987033
summary	wm	mad	458.12152099609375
summary	wm	mean	1094.6043701171875
summary	wm	median	999.7077026367188
summary	wm	n	14082.0
summary	wm	p05	472.99964752197263
summary	wm	p95	1758.7294372558592
summary	wm	stdv	558.0361938476562
tpm	overlap	csf	0.08816160261631012
tpm	overlap	gm	0.2858591675758362
tpm	overlap	wm	0.07412391901016235
wm2max			0.28084620850894415

Metadata

AcquisitionNumber	4
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
EchoTime	0.37425
ImageOrientationPatientDICOM	[0.0451886, 0.998978, 0, 0, 0, -1]
Manufacturer	Philips
PatientPosition	HFS
PhilipsRescaleIntercept	0
PhilipsRescaleSlope	6.4381
PhilipsScaleSlope	0.000225209
ProtocolName	WIP3DisoFLAIR_sag_PRESENSE4.2
ReconMatrixPE	288
RepetitionTime	4.8
SeriesNumber	4
UsePhilipsFloatNotDisplayScaling	1

Provenance information

md5sum	ab8e98323166ef5ba0ee2c80d2228a2c
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.