MRIQC: individual T1w report

Summary

Subject ID: testUTdallas_pre.
Date and time: 2018-05-31, 15:46.
MRIQC version: 0.10.4.
Workflow details:
- Detected hat mask was too small
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.47753207572404577
cnr			2.795800188657382
efc			0.769041651720147
fber			722.0407104492188
fwhm	avg		3.475010141544748
fwhm	x		3.4125602034044387
fwhm	y		3.7116202212298046
fwhm	z		3.30085
icvs	csf		0.19815602415921948
icvs	gm		0.4533651096873204
icvs	wm		0.34847886615346013
inu	med		1.1745948791503906
inu	range		0.4703184992074966
qi	1		0.0
qi	2		1.2896639377369839e-05
rpve	csf		25.60285973798479
rpve	gm		12.33121971551543
rpve	wm		18.97333125309678
size	x		170
size	y		256
size	z		256
snr	csf		1.4355526037368693
snr	gm		7.615802160178131
snr	total		7.893129093606287
snr	wm		14.628032516903861
snrd	csf		13.32260667683912
snrd	gm		28.553275084490508
snrd	total		27.95325801715624
snrd	wm		41.983892290139096
spacing	x		0.9999999403953552
spacing	y		0.9999999403953552
spacing	z		1.0
summary	bg	k	2.5077225850736156
summary	bg	mad	15.604818344116211
summary	bg	mean	20.015344619750977
summary	bg	median	15.363824844360352
summary	bg	n	208147.0
summary	bg	p05	0.0
summary	bg	p95	63.67389945983885
summary	bg	stdv	21.086559295654297
summary	csf	k	63.349314214086775
summary	csf	mad	140.3960723876953
summary	csf	mean	334.5868225097656
summary	csf	median	317.3337097167969
summary	csf	n	12068.0
summary	csf	p05	107.589790725708
summary	csf	p95	549.9739013671874
summary	csf	stdv	221.044189453125
summary	gm	k	-0.08347615645136575
summary	gm	mad	89.55708312988281
summary	gm	mean	683.1373291015625
summary	gm	median	680.1159057617188
summary	gm	n	19447.0
summary	gm	p05	543.1763549804687
summary	gm	p95	837.5715515136719
summary	gm	stdv	89.30095672607422
summary	wm	k	0.7521504239206691
summary	wm	mad	63.208499908447266
summary	wm	mean	1002.4041748046875
summary	wm	median	1000.0223388671875
summary	wm	n	177372.0
summary	wm	p05	894.7520416259765
summary	wm	p95	1118.0157897949218
summary	wm	stdv	68.36322784423828
tpm	overlap	csf	0.2087152600288391
tpm	overlap	gm	0.5009638071060181
tpm	overlap	wm	0.513643205165863
wm2max			0.41696018709811483

Metadata

AcquisitionNumber	3
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
EchoTime	0.0037
ImageOrientationPatientDICOM	[0.0451886, 0.998978, 0, 0, 0, -1]
Manufacturer	Philips
PatientPosition	HFS
PhilipsRescaleIntercept	0
PhilipsRescaleSlope	8.60293
PhilipsScaleSlope	0.000411776
ProtocolName	WIPMPRAGE_iso_sag_PRESENSE4.2
ReconMatrixPE	256
RepetitionTime	0.00846
SeriesNumber	3
UsePhilipsFloatNotDisplayScaling	1

Provenance information

md5sum	5466ea66b05a69e5112e86f4da2f4a9f
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.