MRIQC: individual T1w report

Summary

Subject ID: GE120027_pre.
Date and time: 2018-11-10, 00:43.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.4022220913210409
cnr			3.2556311618637257
efc			0.6479443862694255
fber			4553.25732421875
fwhm	avg		3.081233333333333
fwhm	x		3.16809
fwhm	y		3.20369
fwhm	z		2.87192
icvs	csf		0.22067096396651378
icvs	gm		0.3818956613613422
icvs	wm		0.397433374672144
inu	med		1.1441621780395508
inu	range		0.17068823575973502
qi	1		0.0
qi	2		0.00233556487507345
rpve	csf		36.098180924009206
rpve	gm		20.715871485525184
rpve	wm		25.90941203397074
size	x		196
size	y		256
size	z		256
snr	csf		2.997369425669466
snr	gm		9.544651817374833
snr	total		10.86518936735707
snr	wm		20.053546859026916
snrd	csf		34.73990614793092
snrd	gm		67.37391168147914
snrd	total		65.86614174894521
snrd	wm		95.48460741742556
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	4.616222671827336
summary	bg	mad	6.8610968589782715
summary	bg	mean	13.1522216796875
summary	bg	median	7.368819713592529
summary	bg	n	947983.0
summary	bg	p05	1.3642729759216308
summary	bg	p95	47.80889701843256
summary	bg	stdv	15.0370512008667
summary	csf	k	5.410361430498153
summary	csf	mad	108.47686767578125
summary	csf	mean	367.0376892089844
summary	csf	median	363.8232727050781
summary	csf	n	3980.0
summary	csf	p05	171.82692337036133
summary	csf	p95	557.2478515624999
summary	csf	stdv	121.36560821533203
summary	gm	k	0.36480533525053493
summary	gm	mad	69.99567413330078
summary	gm	mean	703.6320190429688
summary	gm	median	705.5919189453125
summary	gm	n	8791.0
summary	gm	p05	580.0542297363281
summary	gm	p95	823.7070617675781
summary	gm	stdv	73.9211654663086
summary	wm	k	0.2584687636101832
summary	wm	mad	48.41731643676758
summary	wm	mean	999.4998168945312
summary	wm	median	999.9889526367188
summary	wm	n	145826.0
summary	wm	p05	917.3154754638672
summary	wm	p95	1080.7498168945312
summary	wm	stdv	49.86576843261719
tpm	overlap	csf	0.15212608873844147
tpm	overlap	gm	0.44183748960494995
tpm	overlap	wm	0.563176691532135
wm2max			0.5827325848360855

Metadata

AcquisitionMatrixPE	256
AcquisitionNumber	1
AcquisitionTime	15:04:33.000000
BodyPartExamined	HEAD
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20180622 GCC4.8.2
DeviceSerialNumber	0000000319335MR2
EchoTime	0.003168
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Iowa_MRRF
InversionTime	0.9
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	DISCOVERY_MR750w
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	90
PixelBandwidth	244.141
ProcedureStepDescription	BETTER_AGING
ProtocolName	anat-T1w
ReconMatrixPE	256
RepetitionTime	0.008388
SAR	0.0679802
ScanOptions	EDR_GEMS_PROMO_GEMS_FILTERED_GEMS_ACC_GEMS_IR_GEMS
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	anat-T1w
SeriesNumber	3
SliceThickness	1
SoftwareVersions	27_LX_MR_Software_release:DV26.0_R02_1810.b
SpacingBetweenSlices	1
StationName	Iowa3T

Provenance information

md5sum	31ce881c5110eacb374de7a08badb90b
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.