MRIQC: individual T1w report

Summary

Subject ID: GE120026_pre.
Date and time: 2018-11-07, 05:14.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.47911589922449516
cnr			2.739604187640413
efc			0.6696465238592644
fber			2113.906982421875
fwhm	avg		3.0704000000000007
fwhm	x		3.09382
fwhm	y		3.17409
fwhm	z		2.94329
icvs	csf		0.22916697359672764
icvs	gm		0.3778094133561916
icvs	wm		0.3930236130470807
inu	med		1.2910339832305908
inu	range		0.24797707796096802
qi	1		0.0
qi	2		0.0012698226253377589
rpve	csf		32.01613178259583
rpve	gm		18.79956476650211
rpve	wm		23.146724389546147
size	x		196
size	y		256
size	z		256
snr	csf		3.2231777377080495
snr	gm		10.346431377284626
snr	total		9.630291215314395
snr	wm		15.32126453095051
snrd	csf		30.71935343579316
snrd	gm		59.40226854900405
snrd	total		57.19289584979657
snrd	wm		81.45706556459251
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	186.75335749383487
summary	bg	mad	8.042811393737793
summary	bg	mean	17.58802032470703
summary	bg	median	8.293741226196289
summary	bg	n	1078816.0
summary	bg	p05	1.5058679282665253
summary	bg	p95	65.50961303710938
summary	bg	stdv	23.237478256225586
summary	csf	k	0.11314653693265964
summary	csf	mad	111.09608459472656
summary	csf	mean	370.97283935546875
summary	csf	median	377.1275329589844
summary	csf	n	5991.0
summary	csf	p05	165.48272705078125
summary	csf	p95	556.5765075683594
summary	csf	stdv	116.9951171875
summary	gm	k	0.20908285107254443
summary	gm	mad	67.56721496582031
summary	gm	mean	727.9922485351562
summary	gm	median	729.254638671875
summary	gm	n	9448.0
summary	gm	p05	607.6456054687501
summary	gm	p95	842.3767150878906
summary	gm	stdv	70.4799575805664
summary	wm	k	0.4424429694245391
summary	wm	mad	62.15663146972656
summary	wm	mean	1003.9328002929688
summary	wm	median	1000.0113525390625
summary	wm	n	161022.0
summary	wm	p05	903.7189788818359
summary	wm	p95	1118.435675048828
summary	wm	stdv	65.26930236816406
tpm	overlap	csf	0.1521998941898346
tpm	overlap	gm	0.44148293137550354
tpm	overlap	wm	0.5647117495536804
wm2max			0.4851562443789514

Metadata

AcquisitionMatrixPE	256
AcquisitionNumber	1
AcquisitionTime	14:05:39.000000
BodyPartExamined	HEAD
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20180622 GCC4.8.2
DeviceSerialNumber	0000000319335MR2
EchoTime	0.003168
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Iowa_MRRF
InversionTime	0.9
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	DISCOVERY_MR750w
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	90
PixelBandwidth	244.141
ProcedureStepDescription	BETTER_AGING
ProtocolName	anat-T1w
ReconMatrixPE	256
RepetitionTime	0.008388
SAR	0.249013
ScanOptions	EDR_GEMS_PROMO_GEMS_FILTERED_GEMS_ACC_GEMS_IR_GEMS
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	anat-T1w
SeriesNumber	3
SliceThickness	1
SoftwareVersions	27_LX_MR_Software_release:DV26.0_R02_1810.b
SpacingBetweenSlices	1
StationName	Iowa3T

Provenance information

md5sum	b15fff90a00f1f7d591442125a6639b8
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.