MRIQC: individual T1w report

Summary

Subject ID: GE120025_pre.
Date and time: 2018-10-25, 18:49.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.45557071312912034
cnr			2.905126753287738
efc			0.680626613393958
fber			3254.956787109375
fwhm	avg		3.2128866666666664
fwhm	x		3.21575
fwhm	y		3.41977
fwhm	z		3.00314
icvs	csf		0.22074431715938816
icvs	gm		0.39298616765637895
icvs	wm		0.3862695151842329
inu	med		1.192129373550415
inu	range		0.19829570651054373
qi	1		0.0
qi	2		0.0015316603972694977
rpve	csf		31.17519385905335
rpve	gm		17.432203936576613
rpve	wm		22.759948437271877
size	x		196
size	y		256
size	z		256
snr	csf		2.7970905107110378
snr	gm		9.245284263542695
snr	total		9.814703684972308
snr	wm		17.401736280663194
snrd	csf		28.99085693851556
snrd	gm		59.722089951709364
snrd	total		57.39287139811643
snrd	wm		83.46566730412437
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	10.334360687917746
summary	bg	mad	7.849301815032959
summary	bg	mean	15.330023765563965
summary	bg	median	7.981088638305664
summary	bg	n	958937.0
summary	bg	p05	1.3079575300216675
summary	bg	p95	53.67998275756834
summary	bg	stdv	17.227012634277344
summary	csf	k	-0.6727123224259577
summary	csf	mad	142.37481689453125
summary	csf	mean	332.5552062988281
summary	csf	median	347.3444519042969
summary	csf	n	10596.0
summary	csf	p05	137.7487564086914
summary	csf	p95	526.6325073242188
summary	csf	stdv	124.17476654052734
summary	gm	k	0.10454392944446678
summary	gm	mad	74.43827819824219
summary	gm	mean	718.5886840820312
summary	gm	median	715.5406494140625
summary	gm	n	13562.0
summary	gm	p05	593.80751953125
summary	gm	p95	852.8015533447265
summary	gm	stdv	77.39234924316406
summary	wm	k	0.35224274037499015
summary	wm	mad	55.160606384277344
summary	wm	mean	1001.4285278320312
summary	wm	median	1000.0165405273438
summary	wm	n	170828.0
summary	wm	p05	909.5653411865235
summary	wm	p95	1098.4028686523438
summary	wm	stdv	57.466312408447266
tpm	overlap	csf	0.18410450220108032
tpm	overlap	gm	0.4624725580215454
tpm	overlap	wm	0.5850148797035217
wm2max			0.5185387423882458

Metadata

AcquisitionMatrixPE	256
AcquisitionNumber	1
AcquisitionTime	09:46:38.000000
BodyPartExamined	HEAD
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20180622 GCC4.8.2
DeviceSerialNumber	0000000319335MR2
EchoTime	0.003168
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Iowa_MRRF
InversionTime	0.9
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	DISCOVERY_MR750w
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	90
PixelBandwidth	244.141
ProcedureStepDescription	BETTER_AGING
ProtocolName	anat-T1w
ReconMatrixPE	256
RepetitionTime	0.008388
SAR	0.100318
ScanOptions	EDR_GEMS_PROMO_GEMS_FILTERED_GEMS_ACC_GEMS_IR_GEMS
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	anat-T1w
SeriesNumber	3
SliceThickness	1
SoftwareVersions	27_LX_MR_Software_release:DV26.0_R02_1810.b
SpacingBetweenSlices	1
StationName	Iowa3T

Provenance information

md5sum	bac470bcfec9374f1df779a3884e88f5
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.