MRIQC: individual T1w report

Summary

Subject ID: GE120023_pre.
Date and time: 2018-10-11, 22:29.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.45691334047637056
cnr			2.920332496409181
efc			0.6483180509845546
fber			4263.11669921875
fwhm	avg		2.9850576929553463
fwhm	x		3.073293078866038
fwhm	y		3.12813
fwhm	z		2.75375
icvs	csf		0.21140890937132942
icvs	gm		0.4051444511554775
icvs	wm		0.3834466394731931
inu	med		1.3015589714050293
inu	range		0.20300209522247314
qi	1		0.0
qi	2		0.0007373116478992029
rpve	csf		38.62937401183232
rpve	gm		20.75150054543053
rpve	wm		27.366982369288632
size	x		196
size	y		256
size	z		256
snr	csf		3.097591632709946
snr	gm		10.817202243339462
snr	total		10.27741564782758
snr	wm		16.917453067433332
snrd	csf		30.523284293015813
snrd	gm		56.40506849603763
snrd	total		54.65802639978663
snrd	wm		77.04572641030643
spacing	x		0.9997940063476562
spacing	y		1.0
spacing	z		1.0
summary	bg	k	14.999575095002022
summary	bg	mad	8.50333023071289
summary	bg	mean	15.978842735290527
summary	bg	median	8.402827262878418
summary	bg	n	1124336.0
summary	bg	p05	1.2688459753990173
summary	bg	p95	57.848676681518555
summary	bg	stdv	18.478654861450195
summary	csf	k	-0.06715132324381523
summary	csf	mad	121.05523681640625
summary	csf	mean	385.361572265625
summary	csf	median	396.1763916015625
summary	csf	n	2513.0
summary	csf	p05	145.9821990966797
summary	csf	p95	579.6147705078125
summary	csf	stdv	127.87274932861328
summary	gm	k	0.23041508772691666
summary	gm	mad	64.55635833740234
summary	gm	mean	732.5413818359375
summary	gm	median	732.1085205078125
summary	gm	n	13595.0
summary	gm	p05	621.0207336425781
summary	gm	p95	844.997491455078
summary	gm	stdv	67.67753601074219
summary	wm	k	0.22500694747114203
summary	wm	mad	57.853023529052734
summary	wm	mean	1001.2953491210938
summary	wm	median	1000.0135498046875
summary	wm	n	123628.0
summary	wm	p05	906.7005432128906
summary	wm	p95	1100.5141662597657
summary	wm	stdv	59.111114501953125
tpm	overlap	csf	0.12793977558612823
tpm	overlap	gm	0.42612311244010925
tpm	overlap	wm	0.5468587279319763
wm2max			0.48589093720523197

Metadata

AcquisitionMatrixPE	256
AcquisitionNumber	1
AcquisitionTime	13:42:49.000000
BodyPartExamined	HEAD
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20180622 GCC4.8.2
DeviceSerialNumber	0000000319335MR2
EchoTime	0.003168
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Iowa_MRRF
InversionTime	0.9
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	DISCOVERY_MR750w
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	90
PixelBandwidth	244.141
ProcedureStepDescription	BETTER_AGING
ProtocolName	anat-T1w
ReconMatrixPE	256
RepetitionTime	0.008388
SAR	0.0794418
ScanOptions	EDR_GEMS_PROMO_GEMS_FILTERED_GEMS_ACC_GEMS_IR_GEMS
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	anat-T1w
SeriesNumber	3
SliceThickness	1
SoftwareVersions	27_LX_MR_Software_release:DV26.0_R02_1810.b
SpacingBetweenSlices	1
StationName	Iowa3T

Provenance information

md5sum	6228ca20380a815902998e521ddf4ab2
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.