MRIQC: individual T1w report

Summary

Subject ID: GE120021_pre.
Date and time: 2018-08-23, 22:09.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.3874943861533923
cnr			3.4508704726440658
efc			0.6439264103898255
fber			5990.09521484375
fwhm	avg		3.1403766666666666
fwhm	x		3.13117
fwhm	y		3.31501
fwhm	z		2.97495
icvs	csf		0.21185869491276293
icvs	gm		0.4050393603185766
icvs	wm		0.38310194476866044
inu	med		1.2519170045852661
inu	range		0.1496563076972961
qi	1		0.0
qi	2		0.002819683303145328
rpve	csf		33.117943409784864
rpve	gm		17.73371599387073
rpve	wm		23.627936072620557
size	x		196
size	y		256
size	z		256
snr	csf		2.6435979578964117
snr	gm		9.945205707826148
snr	total		10.523044577666985
snr	wm		18.9803300672784
snrd	csf		54.19838696851189
snrd	gm		105.35264422847347
snrd	total		103.70990833572722
snrd	wm		151.5786938101963
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	8.325243340821242
summary	bg	mad	4.32212495803833
summary	bg	mean	9.967353820800781
summary	bg	median	5.470760822296143
summary	bg	n	856633.0
summary	bg	p05	1.280120587348938
summary	bg	p95	37.18839187622069
summary	bg	stdv	12.254559516906738
summary	csf	k	0.7586906816327557
summary	csf	mad	147.2738800048828
summary	csf	mean	335.29864501953125
summary	csf	median	357.5625
summary	csf	n	8433.0
summary	csf	p05	117.98802947998047
summary	csf	p95	538.1861572265625
summary	csf	stdv	135.24798583984375
summary	gm	k	0.14029210334620057
summary	gm	mad	67.15910339355469
summary	gm	mean	695.0347900390625
summary	gm	median	695.0419921875
summary	gm	n	15776.0
summary	gm	p05	578.9557647705078
summary	gm	p95	810.9847869873047
summary	gm	stdv	69.88492584228516
summary	wm	k	0.2608379971777497
summary	wm	mad	51.013771057128906
summary	wm	mean	999.8721313476562
summary	wm	median	1000.0086669921875
summary	wm	n	161847.0
summary	wm	p05	912.9771423339844
summary	wm	p95	1086.0768432617188
summary	wm	stdv	52.68641662597656
tpm	overlap	csf	0.1864873766899109
tpm	overlap	gm	0.47939708828926086
tpm	overlap	wm	0.5811622738838196
wm2max			0.5183098202948621

Metadata

AcquisitionMatrixPE	256
AcquisitionNumber	1
AcquisitionTime	13:31:26.000000
BodyPartExamined	HEAD
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20180622 GCC4.8.2
DeviceSerialNumber	0000000319335MR2
EchoTime	0.003168
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Iowa_MRRF
InversionTime	0.9
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	DISCOVERY_MR750w
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	90
PixelBandwidth	244.141
ProcedureStepDescription	BETTER_AGING
ProtocolName	anat-T1w
ReconMatrixPE	256
RepetitionTime	0.008388
SAR	0.0776525
ScanOptions	EDR_GEMS_PROMO_GEMS_FILTERED_GEMS_ACC_GEMS_IR_GEMS
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	anat-T1w
SeriesNumber	3
SliceThickness	1
SoftwareVersions	27_LX_MR_Software_release:DV26.0_R02_1810.b
SpacingBetweenSlices	1
StationName	Iowa3T

Provenance information

md5sum	059cef5dc27e17d5ddb419f598427072
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.