MRIQC: individual T1w report

Summary

Subject ID: GE120020_pre.
Date and time: 2018-08-23, 20:28.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.5301042062306026
cnr			2.5553385503440533
efc			0.6824549740153205
fber			2296.960693359375
fwhm	avg		2.998413333333333
fwhm	x		3.05271
fwhm	y		3.15654
fwhm	z		2.78599
icvs	csf		0.22921910311940202
icvs	gm		0.3875129648065172
icvs	wm		0.3832679320740808
inu	med		1.3277792930603027
inu	range		0.2590273737907409
qi	1		0.0005207241354266444
qi	2		0.0006246513425746958
rpve	csf		30.713747251848538
rpve	gm		17.615799647238923
rpve	wm		22.095835948943293
size	x		196
size	y		256
size	z		256
snr	csf		3.539290308031831
snr	gm		10.740928825005607
snr	total		9.609406897860142
snr	wm		14.548001560542986
snrd	csf		27.708726407707662
snrd	gm		46.98112949806254
snrd	total		45.999793720044714
snrd	wm		63.309525254363926
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	213.1279229212315
summary	bg	mad	10.348384857177734
summary	bg	mean	19.762605667114258
summary	bg	median	10.48726749420166
summary	bg	n	1231006.0
summary	bg	p05	1.4051241278648376
summary	bg	p95	67.50984764099121
summary	bg	stdv	26.256494522094727
summary	csf	k	-0.06464682765870533
summary	csf	mad	113.692626953125
summary	csf	mean	418.4325256347656
summary	csf	median	437.68072509765625
summary	csf	n	7047.0
summary	csf	p05	186.31270446777344
summary	csf	p95	597.401806640625
summary	csf	stdv	123.6546401977539
summary	gm	k	0.08747924112343286
summary	gm	mad	67.53441619873047
summary	gm	mean	742.726318359375
summary	gm	median	742.1032104492188
summary	gm	n	9881.0
summary	gm	p05	629.8750610351562
summary	gm	p95	858.0679321289062
summary	gm	stdv	69.08766174316406
summary	wm	k	0.05578085025220414
summary	wm	mad	69.18985748291016
summary	wm	mean	1001.8382568359375
summary	wm	median	1000.0228271484375
summary	wm	n	145257.0
summary	wm	p05	892.2945556640625
summary	wm	p95	1117.330029296875
summary	wm	stdv	68.73929595947266
tpm	overlap	csf	0.14031857252120972
tpm	overlap	gm	0.4174656569957733
tpm	overlap	wm	0.5246016383171082
wm2max			0.4333360411457015

Metadata

AcquisitionMatrixPE	256
AcquisitionNumber	1
AcquisitionTime	12:12:26.000000
BodyPartExamined	HEAD
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20180622 GCC4.8.2
DeviceSerialNumber	0000000319335MR2
EchoTime	0.003168
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Iowa_MRRF
InversionTime	0.9
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	DISCOVERY_MR750w
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	90
PixelBandwidth	244.141
ProcedureStepDescription	BETTER_AGING
ProtocolName	anat-T1w
ReconMatrixPE	256
RepetitionTime	0.008388
SAR	0.119691
ScanOptions	EDR_GEMS_PROMO_GEMS_FILTERED_GEMS_ACC_GEMS_IR_GEMS
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	anat-T1w
SeriesNumber	3
SliceThickness	1
SoftwareVersions	27_LX_MR_Software_release:DV26.0_R02_1810.b
SpacingBetweenSlices	1
StationName	Iowa3T

Provenance information

md5sum	9fc69da61b861d3b516b1e132b158a8a
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.