MRIQC: individual T1w report

Summary

Subject ID: GE120019_pre.
Date and time: 2018-08-30, 00:31.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.42327697498704125
cnr			3.103498146973118
efc			0.6644349465719668
fber			3920.545654296875
fwhm	avg		2.9135466666666665
fwhm	x		2.89517
fwhm	y		3.06474
fwhm	z		2.78073
icvs	csf		0.2221251070093806
icvs	gm		0.40121694898710475
icvs	wm		0.37665794400351466
inu	med		1.3305624723434448
inu	range		0.1897110939025879
qi	1		0.0
qi	2		0.0015150123552080653
rpve	csf		37.193234380594475
rpve	gm		21.048756893515343
rpve	wm		28.096257095488532
size	x		196
size	y		256
size	z		256
snr	csf		3.6332644880941847
snr	gm		10.833486681060071
snr	total		10.885036587819949
snr	wm		18.18835859430559
snrd	csf		31.10443136760155
snrd	gm		53.19436689414405
snrd	total		52.54696064235292
snrd	wm		73.34208366531315
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	2.9932569039734993
summary	bg	mad	8.932607650756836
summary	bg	mean	16.237409591674805
summary	bg	median	8.673849105834961
summary	bg	n	1050432.0
summary	bg	p05	1.2731551647186279
summary	bg	p95	56.94177360534667
summary	bg	stdv	18.180377960205078
summary	csf	k	16.45084418041684
summary	csf	mad	93.28739166259766
summary	csf	mean	423.5270080566406
summary	csf	median	424.10052490234375
summary	csf	n	3657.0
summary	csf	p05	229.4419921875
summary	csf	p95	597.636474609375
summary	csf	stdv	116.71116638183594
summary	gm	k	0.1443007403526928
summary	gm	mad	63.7695426940918
summary	gm	mean	724.4111938476562
summary	gm	median	725.2908325195312
summary	gm	n	10178.0
summary	gm	p05	610.8487609863281
summary	gm	p95	833.214730834961
summary	gm	stdv	66.94568634033203
summary	wm	k	0.5291403123221339
summary	wm	mad	52.50831604003906
summary	wm	mean	1001.0118408203125
summary	wm	median	999.99951171875
summary	wm	n	132532.0
summary	wm	p05	912.7292449951171
summary	wm	p95	1092.6082641601563
summary	wm	stdv	54.97998809814453
tpm	overlap	csf	0.14644715189933777
tpm	overlap	gm	0.45471104979515076
tpm	overlap	wm	0.5808582305908203
wm2max			0.49134914134457647

Metadata

AcquisitionMatrixPE	256
AcquisitionNumber	1
AcquisitionTime	16:41:32.000000
BodyPartExamined	HEAD
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20180622 GCC4.8.2
DeviceSerialNumber	0000000319335MR2
EchoTime	0.003168
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Iowa_MRRF
InversionTime	0.9
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	DISCOVERY_MR750w
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	90
PixelBandwidth	244.141
ProcedureStepDescription	BETTER_AGING
ProtocolName	anat-T1w
ReconMatrixPE	256
RepetitionTime	0.008388
SAR	0.181515
ScanOptions	EDR_GEMS_PROMO_GEMS_FILTERED_GEMS_ACC_GEMS_IR_GEMS
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	anat-T1w
SeriesNumber	3
SliceThickness	1
SoftwareVersions	27_LX_MR_Software_release:DV26.0_R02_1810.b
SpacingBetweenSlices	1
StationName	Iowa3T

Provenance information

md5sum	c31730584c8c2fe35d8c58625bd59a02
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.