MRIQC: individual T1w report

Summary

Subject ID: GE120018_post.
Date and time: 2018-11-06, 18:40.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.4263272225512279
cnr			3.0822597378293577
efc			0.6608141683141685
fber			3739.98583984375
fwhm	avg		3.1261266666666665
fwhm	x		3.10807
fwhm	y		3.33855
fwhm	z		2.93176
icvs	csf		0.22682666700156026
icvs	gm		0.37995206616687355
icvs	wm		0.39322126683156616
inu	med		1.2946699857711792
inu	range		0.19551132917404157
qi	1		0.0
qi	2		0.0007124553465650251
rpve	csf		32.754370117939295
rpve	gm		19.381768692960453
rpve	wm		24.34005647975825
size	x		196
size	y		256
size	z		256
snr	csf		3.7996560729023376
snr	gm		10.06739604130868
snr	total		10.735660493413855
snr	wm		18.339929366030546
snrd	csf		32.838106271256635
snrd	gm		54.05594322293109
snrd	total		54.06686186331529
snrd	wm		75.30653609575813
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	2.883296949267585
summary	bg	mad	8.699579238891602
summary	bg	mean	15.997063636779785
summary	bg	median	8.541580200195312
summary	bg	n	1026466.0
summary	bg	p05	1.206922024488449
summary	bg	p95	56.88659858703613
summary	bg	stdv	18.0377140045166
summary	csf	k	0.3777945502841078
summary	csf	mad	95.59219360351562
summary	csf	mean	414.80560302734375
summary	csf	median	436.0583801269531
summary	csf	n	5077.0
summary	csf	p05	179.83367309570315
summary	csf	p95	573.4110229492187
summary	csf	stdv	114.75128936767578
summary	gm	k	0.15393990626172638
summary	gm	mad	67.48491668701172
summary	gm	mean	718.1266479492188
summary	gm	median	717.810791015625
summary	gm	n	13521.0
summary	gm	p05	600.4013671875
summary	gm	p95	838.8676147460938
summary	gm	stdv	71.29790496826172
summary	wm	k	0.28391246340455956
summary	wm	mad	52.819244384765625
summary	wm	mean	1000.58203125
summary	wm	median	999.9981689453125
summary	wm	n	166773.0
summary	wm	p05	912.0575805664063
summary	wm	p95	1091.2945068359375
summary	wm	stdv	54.52557373046875
tpm	overlap	csf	0.15866342186927795
tpm	overlap	gm	0.4527032971382141
tpm	overlap	wm	0.587541401386261
wm2max			0.48831075977451877

Metadata

AcquisitionMatrixPE	256
AcquisitionNumber	1
AcquisitionTime	09:29:58.000000
BodyPartExamined	HEAD
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20180622 GCC4.8.2
DeviceSerialNumber	0000000319335MR2
EchoTime	0.003168
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Iowa_MRRF
InversionTime	0.9
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	DISCOVERY_MR750w
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	90
PixelBandwidth	244.141
ProcedureStepDescription	BETTER_AGING
ProtocolName	anat-T1w
ReconMatrixPE	256
RepetitionTime	0.008388
SAR	0.089841
ScanOptions	EDR_GEMS_PROMO_GEMS_FILTERED_GEMS_ACC_GEMS_IR_GEMS
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	anat-T1w
SeriesNumber	3
SliceThickness	1
SoftwareVersions	27_LX_MR_Software_release:DV26.0_R02_1810.b
SpacingBetweenSlices	1
StationName	Iowa3T

Provenance information

md5sum	dfb2cab049a8f2ca8a3d5156dd9b9fed
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.