MRIQC: individual T1w report

Summary

Subject ID: GE120016_pre.
Date and time: 2018-08-21, 16:24.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.5619958813058348
cnr			2.2122631233200565
efc			0.6787531692866768
fber			3169.69189453125
fwhm	avg		2.9577666666666667
fwhm	x		3.02853
fwhm	y		3.13201
fwhm	z		2.71276
icvs	csf		0.21096030914215327
icvs	gm		0.41603325848755845
icvs	wm		0.3730064323702883
inu	med		1.326038122177124
inu	range		0.22542870640754709
qi	1		0.0
qi	2		0.0002935982171865269
rpve	csf		34.828176473154876
rpve	gm		18.22960593782495
rpve	wm		24.59743083954775
size	x		196
size	y		256
size	z		256
snr	csf		2.9658448361134746
snr	gm		9.281953504230946
snr	total		8.595140670125728
snr	wm		13.537623670032758
snrd	csf		30.16530876173864
snrd	gm		54.08669511348327
snrd	total		52.737343901117015
snrd	wm		73.96002782812914
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	279.65546733087325
summary	bg	mad	8.858316421508789
summary	bg	mean	21.534700393676758
summary	bg	median	8.897253036499023
summary	bg	n	1049824.0
summary	bg	p05	1.346383202075958
summary	bg	p95	67.31813201904296
summary	bg	stdv	55.584537506103516
summary	csf	k	-0.2780955446411175
summary	csf	mad	152.4754638671875
summary	csf	mean	408.9523620605469
summary	csf	median	407.8751525878906
summary	csf	n	3853.0
summary	csf	p05	188.5020294189453
summary	csf	p95	626.6150390624998
summary	csf	stdv	137.50625610351562
summary	gm	k	-0.14989858141574963
summary	gm	mad	79.21741485595703
summary	gm	mean	731.9572143554688
summary	gm	median	731.3241577148438
summary	gm	n	12963.0
summary	gm	p05	601.0310913085938
summary	gm	p95	862.7309326171874
summary	gm	stdv	78.78685760498047
summary	wm	k	0.296322873571214
summary	wm	mad	71.7987060546875
summary	wm	mean	1002.480712890625
summary	wm	median	1000.0380859375
summary	wm	n	140331.0
summary	wm	p05	885.3960571289062
summary	wm	p95	1128.2791748046875
summary	wm	stdv	73.87075805664062
tpm	overlap	csf	0.12224585562944412
tpm	overlap	gm	0.43079322576522827
tpm	overlap	wm	0.5265963673591614
wm2max			0.47849379991002977

Metadata

AcquisitionMatrixPE	256
AcquisitionNumber	1
AcquisitionTime	09:08:51.000000
BodyPartExamined	HEAD
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20180622 GCC4.8.2
DeviceSerialNumber	0000000319335MR2
EchoTime	0.003168
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Iowa_MRRF
InversionTime	0.9
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	DISCOVERY_MR750w
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	90
PixelBandwidth	244.141
ProcedureStepDescription	BETTER_AGING
ProtocolName	anat-T1w
ReconMatrixPE	256
RepetitionTime	0.008388
SAR	0.0974866
ScanOptions	EDR_GEMS_PROMO_GEMS_FILTERED_GEMS_ACC_GEMS_IR_GEMS
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	anat-T1w
SeriesNumber	3
SliceThickness	1
SoftwareVersions	27_LX_MR_Software_release:DV26.0_R02_1810.b
SpacingBetweenSlices	1
StationName	Iowa3T

Provenance information

md5sum	4500a3877479f5dd84d8a8d4079e4443
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.