MRIQC: individual T1w report

Summary

Subject ID: GE120015_pre.
Date and time: 2018-08-16, 18:25.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.5415129324315856
cnr			2.508250828341017
efc			0.6779005441988697
fber			2506.809814453125
fwhm	avg		2.96481
fwhm	x		3.01664
fwhm	y		3.0477
fwhm	z		2.83009
icvs	csf		0.22611711485352123
icvs	gm		0.3905423914070697
icvs	wm		0.38334049373940904
inu	med		1.340864896774292
inu	range		0.21555817127227783
qi	1		0.0
qi	2		0.0005705275027499052
rpve	csf		33.49252972116902
rpve	gm		18.880391985040642
rpve	wm		23.797521292086085
size	x		196
size	y		256
size	z		256
snr	csf		3.088892565533486
snr	gm		9.457102067217447
snr	total		8.779723343828742
snr	wm		13.793175398735297
snrd	csf		29.297393122097986
snrd	gm		54.97673216523746
snrd	total		53.25396741246584
snrd	wm		75.48777695006207
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	90.61579734356778
summary	bg	mad	8.679085731506348
summary	bg	mean	18.354398727416992
summary	bg	median	8.738675117492676
summary	bg	n	1010791.0
summary	bg	p05	1.4301271438598633
summary	bg	p95	68.24494552612305
summary	bg	stdv	23.428695678710938
summary	csf	k	-0.19721123935389206
summary	csf	mad	126.98383331298828
summary	csf	mean	379.8990783691406
summary	csf	median	388.1246643066406
summary	csf	n	4631.0
summary	csf	p05	163.54167938232422
summary	csf	p95	574.9757690429688
summary	csf	stdv	125.63815307617188
summary	gm	k	0.02911799550860561
summary	gm	mad	75.36241912841797
summary	gm	mean	727.4866943359375
summary	gm	median	728.3182373046875
summary	gm	n	10825.0
summary	gm	p05	597.8869018554688
summary	gm	p95	853.8089721679687
summary	gm	stdv	77.00927734375
summary	wm	k	0.13191011941206376
summary	wm	mad	71.78033447265625
summary	wm	mean	1002.7938232421875
summary	wm	median	1000.0435180664062
summary	wm	n	139883.0
summary	wm	p05	888.4667236328124
summary	wm	p95	1126.261767578125
summary	wm	stdv	72.50251770019531
tpm	overlap	csf	0.12251891940832138
tpm	overlap	gm	0.41262000799179077
tpm	overlap	wm	0.5396832823753357
wm2max			0.48847270042680957

Metadata

AcquisitionMatrixPE	256
AcquisitionNumber	1
AcquisitionTime	10:08:45.000000
BodyPartExamined	HEAD
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20180622 GCC4.8.2
DeviceSerialNumber	0000000319335MR2
EchoTime	0.003168
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Iowa_MRRF
InversionTime	0.9
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	DISCOVERY_MR750w
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	90
PixelBandwidth	244.141
ProcedureStepDescription	BETTER_AGING
ProtocolName	anat-T1w
ReconMatrixPE	256
RepetitionTime	0.008388
SAR	0.0913267
ScanOptions	EDR_GEMS_PROMO_GEMS_FILTERED_GEMS_ACC_GEMS_IR_GEMS
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	anat-T1w
SeriesNumber	3
SliceThickness	1
SoftwareVersions	27_LX_MR_Software_release:DV26.0_R02_1810.b
SpacingBetweenSlices	1
StationName	Iowa3T

Provenance information

md5sum	dfbd992ccc2c59c5a8b99de971d969da
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.