MRIQC: individual T1w report

Summary

Subject ID: GE120012_pre.
Date and time: 2018-08-27, 15:30.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.34849707268579216
cnr			3.8066066991724754
efc			0.6487688396846558
fber			6243.341796875
fwhm	avg		3.2655
fwhm	x		3.3099
fwhm	y		3.49847
fwhm	z		2.98813
icvs	csf		0.23327806640500653
icvs	gm		0.3760611137771763
icvs	wm		0.3906608198178172
inu	med		1.0862520933151245
inu	range		0.13855302333831787
qi	1		0.0
qi	2		0.0027022500319347394
rpve	csf		28.250605560295632
rpve	gm		17.23508991616155
rpve	wm		22.149200009007153
size	x		196
size	y		256
size	z		256
snr	csf		3.447805276418708
snr	gm		9.256853399835517
snr	total		11.625433537069505
snr	wm		22.171641934954287
snrd	csf		50.79893497003119
snrd	gm		96.70780535456929
snrd	total		97.14607164738125
snrd	wm		143.93147461754327
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	5.954609639755761
summary	bg	mad	4.551735877990723
summary	bg	mean	9.574365615844727
summary	bg	median	5.248262882232666
summary	bg	n	885875.0
summary	bg	p05	1.1189042568206786
summary	bg	p95	35.03261337280267
summary	bg	stdv	11.254251480102539
summary	csf	k	14.81220977612562
summary	csf	mad	84.84518432617188
summary	csf	mean	347.6186828613281
summary	csf	median	352.9392395019531
summary	csf	n	6538.0
summary	csf	p05	163.6915092468262
summary	csf	p95	503.0090408325195
summary	csf	stdv	102.3585205078125
summary	gm	k	0.09465732500290036
summary	gm	mad	70.55305480957031
summary	gm	mean	671.4954223632812
summary	gm	median	671.9034423828125
summary	gm	n	15364.0
summary	gm	p05	549.3982604980469
summary	gm	p95	792.2806213378907
summary	gm	stdv	72.58206939697266
summary	wm	k	0.28885829441557975
summary	wm	mad	43.78852844238281
summary	wm	mean	999.1514892578125
summary	wm	median	1000.0025634765625
summary	wm	n	186590.0
summary	wm	p05	923.7519409179688
summary	wm	p95	1071.5125122070312
summary	wm	stdv	45.10265350341797
tpm	overlap	csf	0.15149906277656555
tpm	overlap	gm	0.44227951765060425
tpm	overlap	wm	0.5735814571380615
wm2max			0.5403611788442072

Metadata

AcquisitionMatrixPE	256
AcquisitionNumber	1
AcquisitionTime	15:10:53.000000
BodyPartExamined	HEAD
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20180622 GCC4.8.2
DeviceSerialNumber	0000000319335MR2
EchoTime	0.003168
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Iowa_MRRF
InversionTime	0.9
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	DISCOVERY_MR750w
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	90
PixelBandwidth	244.141
ProcedureStepDescription	BETTER_AGING
ProtocolName	anat-T1w
ReconMatrixPE	256
RepetitionTime	0.008388
SAR	0.0705835
ScanOptions	EDR_GEMS_PROMO_GEMS_FILTERED_GEMS_ACC_GEMS_IR_GEMS
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	anat-T1w
SeriesNumber	3
SliceThickness	1
SoftwareVersions	27_LX_MR_Software_release:DV26.0_R02_1810.b
SpacingBetweenSlices	1
StationName	Iowa3T

Provenance information

md5sum	e23ca786fa445caf881abe4d2bc33fbc
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.