MRIQC: individual T1w report

Summary

Subject ID: GE120011_post.
Date and time: 2018-10-17, 18:31.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.40149674287459713
cnr			3.2721596756066735
efc			0.6712360782249706
fber			5097.6123046875
fwhm	avg		3.2389333333333337
fwhm	x		3.23946
fwhm	y		3.45122
fwhm	z		3.02612
icvs	csf		0.21399203259969046
icvs	gm		0.3854456897262343
icvs	wm		0.40056227767407526
inu	med		1.1003894805908203
inu	range		0.16455122232437147
qi	1		0.0
qi	2		0.0013370220147780958
rpve	csf		30.658506343713956
rpve	gm		17.125393160225943
rpve	wm		21.32350208274599
size	x		196
size	y		256
size	z		256
snr	csf		2.157428010434966
snr	gm		9.06136000936882
snr	total		10.539619381566421
snr	wm		20.40007012489548
snrd	csf		28.34724908525079
snrd	gm		67.67135226304795
snrd	total		64.35640722743396
snrd	wm		97.05062033400316
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	3.048838768398322
summary	bg	mad	6.750614166259766
summary	bg	mean	13.188000679016113
summary	bg	median	6.700096130371094
summary	bg	n	972926.0
summary	bg	p05	1.1350650787353516
summary	bg	p95	47.70561122894287
summary	bg	stdv	15.328422546386719
summary	csf	k	-0.0745096077603642
summary	csf	mad	169.46856689453125
summary	csf	mean	298.30853271484375
summary	csf	median	292.0939025878906
summary	csf	n	9507.0
summary	csf	p05	113.2163558959961
summary	csf	p95	513.2890991210937
summary	csf	stdv	135.38275146484375
summary	gm	k	0.05264330954568308
summary	gm	mad	74.67654418945312
summary	gm	mean	699.6546630859375
summary	gm	median	697.2947998046875
summary	gm	n	14780.0
summary	gm	p05	576.0771789550781
summary	gm	p95	831.4734832763672
summary	gm	stdv	76.949951171875
summary	wm	k	0.5426091974319212
summary	wm	mad	46.86774826049805
summary	wm	mean	1000.2482299804688
summary	wm	median	1000.0227661132812
summary	wm	n	192061.0
summary	wm	p05	920.2947998046875
summary	wm	p95	1080.2362060546875
summary	wm	stdv	49.02042770385742
tpm	overlap	csf	0.19188429415225983
tpm	overlap	gm	0.46553194522857666
tpm	overlap	wm	0.579415500164032
wm2max			0.554119059324414

Metadata

AcquisitionMatrixPE	256
AcquisitionNumber	1
AcquisitionTime	09:35:3.000000
BodyPartExamined	HEAD
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20180622 GCC4.8.2
DeviceSerialNumber	0000000319335MR2
EchoTime	0.003168
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Iowa_MRRF
InversionTime	0.9
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	DISCOVERY_MR750w
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	90
PixelBandwidth	244.141
ProcedureStepDescription	BETTER_AGING
ProtocolName	anat-T1w
ReconMatrixPE	256
RepetitionTime	0.008388
SAR	0.0815999
ScanOptions	EDR_GEMS_PROMO_GEMS_FILTERED_GEMS_ACC_GEMS_IR_GEMS
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	anat-T1w
SeriesNumber	3
SliceThickness	1
SoftwareVersions	27_LX_MR_Software_release:DV26.0_R02_1810.b
SpacingBetweenSlices	1
StationName	Iowa3T

Provenance information

md5sum	14e7899a916ffb7a79f8330f7126d454
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.