MRIQC: individual T1w report

Summary

Subject ID: GE120008_post.
Date and time: 2018-10-30, 21:44.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.49960363202308766
cnr			2.7296140133206674
efc			0.6363177855700285
fber			3814.60302734375
fwhm	avg		2.85502
fwhm	x		2.91251
fwhm	y		2.92409
fwhm	z		2.72846
icvs	csf		0.20937152917864543
icvs	gm		0.4044161798731186
icvs	wm		0.38621229094823595
inu	med		1.2991613149642944
inu	range		0.2059145808219911
qi	1		0.0
qi	2		0.0013698883161478237
rpve	csf		49.98040356852697
rpve	gm		26.062581241160554
rpve	wm		33.23645660478294
size	x		196
size	y		256
size	z		256
snr	csf		3.990701575614517
snr	gm		11.118600620957924
snr	total		10.50979863856532
snr	wm		16.42009371912352
snrd	csf		28.46026665853475
snrd	gm		47.107953313198976
snrd	total		46.22056237056089
snrd	wm		63.09346713994895
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	150.60089176001551
summary	bg	mad	10.383685111999512
summary	bg	mean	17.690126419067383
summary	bg	median	10.328336715698242
summary	bg	n	1121755.0
summary	bg	p05	1.3002915143966676
summary	bg	p95	59.475255584716805
summary	bg	stdv	19.943649291992188
summary	csf	k	0.795161662079785
summary	csf	mad	88.72581481933594
summary	csf	mean	436.3182678222656
summary	csf	median	451.08538818359375
summary	csf	n	1802.0
summary	csf	p05	199.8601486206055
summary	csf	p95	595.5551910400391
summary	csf	stdv	113.00273895263672
summary	gm	k	-0.003337880972242857
summary	gm	mad	66.89826202392578
summary	gm	mean	746.08642578125
summary	gm	median	746.644775390625
summary	gm	n	8887.0
summary	gm	p05	633.4478210449219
summary	gm	p95	855.8346862792966
summary	gm	stdv	67.14898681640625
summary	wm	k	0.18684121996377767
summary	wm	mad	59.683746337890625
summary	wm	mean	1001.254150390625
summary	wm	median	1000.0096435546875
summary	wm	n	86144.0
summary	wm	p05	903.1091430664062
summary	wm	p95	1103.0565490722656
summary	wm	stdv	60.90122604370117
tpm	overlap	csf	0.09869422763586044
tpm	overlap	gm	0.3331890404224396
tpm	overlap	wm	0.3846311569213867
wm2max			0.48043318938637325

Metadata

AcquisitionMatrixPE	256
AcquisitionNumber	1
AcquisitionTime	12:55:39.000000
BodyPartExamined	HEAD
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20180622 GCC4.8.2
DeviceSerialNumber	0000000319335MR2
EchoTime	0.003168
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Iowa_MRRF
InversionTime	0.9
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	DISCOVERY_MR750w
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	90
PixelBandwidth	244.141
ProcedureStepDescription	BETTER_AGING
ProtocolName	anat-T1w
ReconMatrixPE	256
RepetitionTime	0.008388
SAR	0.0787377
ScanOptions	EDR_GEMS_PROMO_GEMS_FILTERED_GEMS_ACC_GEMS_IR_GEMS
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	anat-T1w
SeriesNumber	3
SliceThickness	1
SoftwareVersions	27_LX_MR_Software_release:DV26.0_R02_1810.b
SpacingBetweenSlices	1
StationName	Iowa3T

Provenance information

md5sum	2c5aa5eae85332443c01b0db3d682369
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.