MRIQC: individual T1w report

Summary

Subject ID: GE120005_post.
Date and time: 2018-10-16, 23:42.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.4600159323504197
cnr			2.922349455408273
efc			0.6855813166849933
fber			2589.199951171875
fwhm	avg		2.989573333333333
fwhm	x		2.99432
fwhm	y		3.18225
fwhm	z		2.79215
icvs	csf		0.23338926576632965
icvs	gm		0.3794190287356394
icvs	wm		0.38719170549803095
inu	med		1.2764924764633179
inu	range		0.18041357994079577
qi	1		0.0
qi	2		0.0005718793288688403
rpve	csf		27.92826031258007
rpve	gm		16.669231547242973
rpve	wm		21.15963303359885
size	x		196
size	y		256
size	z		256
snr	csf		3.9011487364693798
snr	gm		9.536512701450222
snr	total		9.902854860469041
snr	wm		16.270903143487523
snrd	csf		32.38290798803947
snrd	gm		53.08701375230589
snrd	total		53.340103403371295
snrd	wm		74.55038846976852
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	17.320387440551897
summary	bg	mad	8.78803539276123
summary	bg	mean	16.66048812866211
summary	bg	median	9.152488708496094
summary	bg	n	1154070.0
summary	bg	p05	1.1384383857250213
summary	bg	p95	58.40095119476318
summary	bg	stdv	18.7979793548584
summary	csf	k	1.1804746220604025
summary	csf	mad	97.9098892211914
summary	csf	mean	420.58148193359375
summary	csf	median	434.3861083984375
summary	csf	n	8067.0
summary	csf	p05	215.34153442382814
summary	csf	p95	582.159814453125
summary	csf	stdv	111.34135437011719
summary	gm	k	0.05298208830087514
summary	gm	mad	71.96566009521484
summary	gm	mean	711.2698364257812
summary	gm	median	712.1121215820312
summary	gm	n	12421.0
summary	gm	p05	585.0916137695312
summary	gm	p95	833.1021118164062
summary	gm	stdv	74.6691665649414
summary	wm	k	0.17908436734211186
summary	wm	mad	60.477935791015625
summary	wm	mean	1000.4524536132812
summary	wm	median	1000.0230102539062
summary	wm	n	176785.0
summary	wm	p05	900.689208984375
summary	wm	p95	1102.3143310546875
summary	wm	stdv	61.46064376831055
tpm	overlap	csf	0.14956004917621613
tpm	overlap	gm	0.43399715423583984
tpm	overlap	wm	0.5522835850715637
wm2max			0.4757129684956839

Metadata

AcquisitionMatrixPE	256
AcquisitionNumber	1
AcquisitionTime	12:13:15.000000
BodyPartExamined	HEAD
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20180622 GCC4.8.2
DeviceSerialNumber	0000000319335MR2
EchoTime	0.003168
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Iowa_MRRF
InversionTime	0.9
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	DISCOVERY_MR750w
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	90
PixelBandwidth	244.141
ProcedureStepDescription	BETTER_AGING
ProtocolName	anat-T1w
ReconMatrixPE	256
RepetitionTime	0.008388
SAR	0.102024
ScanOptions	EDR_GEMS_PROMO_GEMS_FILTERED_GEMS_ACC_GEMS_IR_GEMS
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	anat-T1w
SeriesNumber	3
SliceThickness	1
SoftwareVersions	27_LX_MR_Software_release:DV26.0_R02_1810.b
SpacingBetweenSlices	1
StationName	Iowa3T

Provenance information

md5sum	4be440e955b0b7e8a57bd92b569ef1da
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.