MRIQC: individual T1w report

Summary

Subject ID: GE120004_post.
Date and time: 2018-11-06, 20:40.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.5418423381046673
cnr			2.4815971848663585
efc			0.7074053119568738
fber			4845.16259765625
fwhm	avg		3.0506466666666667
fwhm	x		3.05892
fwhm	y		3.1333
fwhm	z		2.95972
icvs	csf		0.22396535869995718
icvs	gm		0.33509303979105454
icvs	wm		0.4409416015089883
inu	med		1.4694068431854248
inu	range		0.24728448987007123
qi	1		0.0
qi	2		0.00031505065287421285
rpve	csf		25.13336829777082
rpve	gm		15.664144370449947
rpve	wm		16.000444895606186
size	x		196
size	y		256
size	z		256
snr	csf		3.5745947150043427
snr	gm		9.231379203341856
snr	total		8.831672672138149
snr	wm		13.68904409806825
snrd	csf		49.46895360767553
snrd	gm		84.56947123146308
snrd	total		83.55214151494935
snrd	wm		116.61799970570944
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	154.65020174082292
summary	bg	mad	5.617964744567871
summary	bg	mean	15.897066116333008
summary	bg	median	4.606945037841797
summary	bg	n	1409568.0
summary	bg	p05	0.4067659616470337
summary	bg	p95	72.54551544189451
summary	bg	stdv	27.510534286499023
summary	csf	k	0.5162202418697275
summary	csf	mad	113.40740203857422
summary	csf	mean	416.3712158203125
summary	csf	median	424.2091369628906
summary	csf	n	6855.0
summary	csf	p05	206.3854736328125
summary	csf	p95	598.4067504882812
summary	csf	stdv	118.6646957397461
summary	gm	k	0.038146237831638174
summary	gm	mad	77.49650573730469
summary	gm	mean	724.5379638671875
summary	gm	median	725.2052001953125
summary	gm	n	10162.0
summary	gm	p05	592.4913208007812
summary	gm	p95	853.2502532958985
summary	gm	stdv	78.55484008789062
summary	wm	k	0.3226610523242268
summary	wm	mad	71.41502380371094
summary	wm	mean	1003.5079956054688
summary	wm	median	1000.0296630859375
summary	wm	n	246864.0
summary	wm	p05	889.8771026611328
summary	wm	p95	1129.060577392578
summary	wm	stdv	73.05313873291016
tpm	overlap	csf	0.14203163981437683
tpm	overlap	gm	0.39938172698020935
tpm	overlap	wm	0.5538515448570251
wm2max			0.46414388920332855

Metadata

AcquisitionMatrixPE	256
AcquisitionNumber	1
AcquisitionTime	10:43:53.000000
BodyPartExamined	HEAD
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20180622 GCC4.8.2
DeviceSerialNumber	0000000319335MR2
EchoTime	0.003168
FlipAngle	8
ImageOrientationPatientDICOM	[0, 0.96317, -0.2689, 0, -0.2689, -0.96317]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Iowa_MRRF
InversionTime	0.9
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	DISCOVERY_MR750w
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	90
PixelBandwidth	244.141
ProcedureStepDescription	BETTER_AGING
ProtocolName	anat-T1w
ReconMatrixPE	256
RepetitionTime	0.008388
SAR	0.373211
ScanOptions	EDR_GEMS_PROMO_GEMS_FILTERED_GEMS_ACC_GEMS_IR_GEMS
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	anat-T1w
SeriesNumber	3
SliceThickness	1
SoftwareVersions	27_LX_MR_Software_release:DV26.0_R02_1810.b
SpacingBetweenSlices	1
StationName	Iowa3T

Provenance information

md5sum	50ae00468afaa6ac93b0f3de770413d3
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.