MRIQC: individual T1w report

Summary

Subject ID: GE120003_post.
Date and time: 2018-10-16, 19:39.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.4948997594002586
cnr			2.7505249672846666
efc			0.6360165316121271
fber			4159.31298828125
fwhm	avg		3.06005
fwhm	x		3.13423
fwhm	y		3.1759
fwhm	z		2.87002
icvs	csf		0.22780086110221298
icvs	gm		0.3958413194808281
icvs	wm		0.3763578194169589
inu	med		1.2654002904891968
inu	range		0.17226419448852526
qi	1		0.0
qi	2		0.0015258896284395247
rpve	csf		36.1311709581338
rpve	gm		20.526732660484722
rpve	wm		27.11471190580174
size	x		196
size	y		256
size	z		256
snr	csf		3.4174945808025794
snr	gm		9.63485581014752
snr	total		9.449953188260544
snr	wm		15.297509173831532
snrd	csf		26.165102229759448
snrd	gm		45.82997537314691
snrd	total		45.1905818187424
snrd	wm		63.57666785332084
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	3.9665575920043237
summary	bg	mad	10.305042266845703
summary	bg	mean	17.978662490844727
summary	bg	median	9.556653022766113
summary	bg	n	1078290.0
summary	bg	p05	1.2617417335510255
summary	bg	p95	62.9888786315917
summary	bg	stdv	20.710254669189453
summary	csf	k	0.2549700079821391
summary	csf	mad	108.1961669921875
summary	csf	mean	396.8585205078125
summary	csf	median	411.56695556640625
summary	csf	n	4522.0
summary	csf	p05	164.51719512939454
summary	csf	p95	571.1902435302734
summary	csf	stdv	120.41612243652344
summary	gm	k	-0.040371396731485376
summary	gm	mad	74.4459228515625
summary	gm	mean	720.9593505859375
summary	gm	median	720.8878173828125
summary	gm	n	10376.0
summary	gm	p05	594.92041015625
summary	gm	p95	843.8054351806641
summary	gm	stdv	74.81721496582031
summary	wm	k	0.17304064001738206
summary	wm	mad	63.70466232299805
summary	wm	mean	1002.2274780273438
summary	wm	median	1000.0364379882812
summary	wm	n	127937.0
summary	wm	p05	898.1057495117188
summary	wm	p95	1113.0185791015624
summary	wm	stdv	65.37224578857422
tpm	overlap	csf	0.14849545061588287
tpm	overlap	gm	0.45090869069099426
tpm	overlap	wm	0.5617337822914124
wm2max			0.4847040864251835

Metadata

AcquisitionMatrixPE	256
AcquisitionNumber	1
AcquisitionTime	11:06:7.000000
BodyPartExamined	HEAD
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20180622 GCC4.8.2
DeviceSerialNumber	0000000319335MR2
EchoTime	0.003168
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Iowa_MRRF
InversionTime	0.9
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	DISCOVERY_MR750w
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	90
PixelBandwidth	244.141
ProcedureStepDescription	BETTER_AGING
ProtocolName	anat-T1w
ReconMatrixPE	256
RepetitionTime	0.008388
SAR	0.0849169
ScanOptions	EDR_GEMS_PROMO_GEMS_FILTERED_GEMS_ACC_GEMS_IR_GEMS
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	anat-T1w
SeriesNumber	3
SliceThickness	1
SoftwareVersions	27_LX_MR_Software_release:DV26.0_R02_1810.b
SpacingBetweenSlices	1
StationName	Iowa3T

Provenance information

md5sum	fd34f120de5a5707622cf527d7b79428
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.