MRIQC: individual T1w report

Summary

Subject ID: GE120002_post.
Date and time: 2018-10-25, 19:35.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.4139802976442501
cnr			3.2541417072332175
efc			0.6526680401149715
fber			4457.92724609375
fwhm	avg		3.1681600000000003
fwhm	x		3.23156
fwhm	y		3.2871
fwhm	z		2.98582
icvs	csf		0.22744376629304627
icvs	gm		0.3871151279765047
icvs	wm		0.385441105730449
inu	med		1.2900718450546265
inu	range		0.1781657636165619
qi	1		0.0
qi	2		0.0009271811127393203
rpve	csf		30.476957732751742
rpve	gm		17.918947213960394
rpve	wm		23.018786907676798
size	x		196
size	y		256
size	z		256
snr	csf		3.8799729300876624
snr	gm		10.11881017086371
snr	total		10.314196600276516
snr	wm		16.94380669987817
snrd	csf		31.93827659765618
snrd	gm		54.97140444334563
snrd	total		55.20554625687896
snrd	wm		78.70695772963506
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	105.38760820537122
summary	bg	mad	8.323793411254883
summary	bg	mean	15.022631645202637
summary	bg	median	8.062055587768555
summary	bg	n	1035368.0
summary	bg	p05	1.1149272322654724
summary	bg	p95	54.36721439361564
summary	bg	stdv	18.469636917114258
summary	csf	k	0.5362149377648153
summary	csf	mad	94.56050872802734
summary	csf	mean	401.8042907714844
summary	csf	median	405.78973388671875
summary	csf	n	6217.0
summary	csf	p05	212.88163452148436
summary	csf	p95	565.3521850585937
summary	csf	stdv	104.57730102539062
summary	gm	k	0.06317325096764215
summary	gm	mad	68.06505584716797
summary	gm	mean	699.3120727539062
summary	gm	median	698.4356689453125
summary	gm	n	14231.0
summary	gm	p05	586.1753845214844
summary	gm	p95	815.8053894042969
summary	gm	stdv	69.02107238769531
summary	wm	k	0.499828657321161
summary	wm	mad	56.779212951660156
summary	wm	mean	1000.4551391601562
summary	wm	median	1000.0062255859375
summary	wm	n	167938.0
summary	wm	p05	904.4946075439452
summary	wm	p95	1097.3453063964844
summary	wm	stdv	59.01880645751953
tpm	overlap	csf	0.15122036635875702
tpm	overlap	gm	0.44985127449035645
tpm	overlap	wm	0.560499370098114
wm2max			0.48892301901514795

Metadata

AcquisitionMatrixPE	256
AcquisitionNumber	1
AcquisitionTime	11:34:57.000000
BodyPartExamined	HEAD
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20180622 GCC4.8.2
DeviceSerialNumber	0000000319335MR2
EchoTime	0.003168
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Iowa_MRRF
InversionTime	0.9
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	DISCOVERY_MR750w
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	90
PixelBandwidth	244.141
ProcedureStepDescription	BETTER_AGING
ProtocolName	anat-T1w
ReconMatrixPE	256
RepetitionTime	0.008388
SAR	0.0808514
ScanOptions	EDR_GEMS_PROMO_GEMS_FILTERED_GEMS_ACC_GEMS_IR_GEMS
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	anat-T1w
SeriesNumber	3
SliceThickness	1
SoftwareVersions	27_LX_MR_Software_release:DV26.0_R02_1810.b
SpacingBetweenSlices	1
StationName	Iowa3T

Provenance information

md5sum	68418e0672bcfbfbee63d3de8675a264
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.