MRIQC: individual T1w report

Summary

Subject ID: GE120001_post.
Date and time: 2018-11-02, 18:38.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.48498559433565996
cnr			2.7438186302786978
efc			0.6843120434122995
fber			4618.73095703125
fwhm	avg		3.0526700000000004
fwhm	x		3.06571
fwhm	y		3.2054
fwhm	z		2.8869
icvs	csf		0.2092304877720733
icvs	gm		0.3815884041394755
icvs	wm		0.4091811080884512
inu	med		1.1882506608963013
inu	range		0.19239497184753418
qi	1		0.0
qi	2		0.0019596746900943426
rpve	csf		30.424915449085802
rpve	gm		17.019987182031247
rpve	wm		20.607467775869992
size	x		196
size	y		256
size	z		256
snr	csf		3.0368405837460326
snr	gm		9.839129289347948
snr	total		10.065720762430242
snr	wm		17.321192414196744
snrd	csf		34.883332451269936
snrd	gm		65.63254306383071
snrd	total		63.23080028747709
snrd	wm		89.17652534733061
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	2.905764668187219
summary	bg	mad	7.346680641174316
summary	bg	mean	15.677852630615234
summary	bg	median	7.803071022033691
summary	bg	n	1040343.0
summary	bg	p05	1.358958125114441
summary	bg	p95	57.29862899780267
summary	bg	stdv	18.183351516723633
summary	csf	k	28.237501046172078
summary	csf	mad	88.74601745605469
summary	csf	mean	402.054931640625
summary	csf	median	391.1806945800781
summary	csf	n	6651.0
summary	csf	p05	220.60214233398438
summary	csf	p95	597.9484252929688
summary	csf	stdv	128.8020477294922
summary	gm	k	0.166258534072111
summary	gm	mad	71.39918518066406
summary	gm	mean	736.8893432617188
summary	gm	median	736.00146484375
summary	gm	n	17235.0
summary	gm	p05	613.4886535644532
summary	gm	p95	863.5540771484375
summary	gm	stdv	74.80134582519531
summary	wm	k	0.23817201672129285
summary	wm	mad	56.6474609375
summary	wm	mean	1001.9447631835938
summary	wm	median	1000.0230102539062
summary	wm	n	198201.0
summary	wm	p05	910.483642578125
summary	wm	p95	1099.883056640625
summary	wm	stdv	57.73392868041992
tpm	overlap	csf	0.1623704731464386
tpm	overlap	gm	0.4497889578342438
tpm	overlap	wm	0.5721060037612915
wm2max			0.5108583858602049

Metadata

AcquisitionMatrixPE	256
AcquisitionNumber	1
AcquisitionTime	09:04:34.000000
BodyPartExamined	HEAD
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20180622 GCC4.8.2
DeviceSerialNumber	0000000319335MR2
EchoTime	0.003168
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Iowa_MRRF
InversionTime	0.9
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	DISCOVERY_MR750w
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	90
PixelBandwidth	244.141
ProcedureStepDescription	BETTER_AGING
ProtocolName	anat-T1w
ReconMatrixPE	256
RepetitionTime	0.008388
SAR	0.0828441
ScanOptions	EDR_GEMS_PROMO_GEMS_FILTERED_GEMS_ACC_GEMS_IR_GEMS
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	anat-T1w
SeriesNumber	3
SliceThickness	1
SoftwareVersions	27_LX_MR_Software_release:DV26.0_R02_1810.b
SpacingBetweenSlices	1
StationName	Iowa3T

Provenance information

md5sum	708f38ad170e293a69f3d3ec9fa0b2df
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.